IL_4V6K_080

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GU(7MG)A*UCC

Length

7 nucleotides

Bulged bases

4V6K|1|AB|U|2068

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_080 not in the Motif Atlas

Homologous match to IL_5J7L_323

Geometric discrepancy: 0.2762

The information below is about IL_5J7L_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6K|1|AB|G|2067
4V6K|1|AB|U|2068
4V6K|1|AB|7MG|2069
4V6K|1|AB|A|2070
*
4V6K|1|AB|U|2441
4V6K|1|AB|C|2442
4V6K|1|AB|C|2443

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AM

50S ribosomal protein L15