IL_4V6K_085

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GAUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_085 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2358

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V6K|1|AB|G|2107
4V6K|1|AB|A|2108
4V6K|1|AB|U|2109
4V6K|1|AB|G|2110
*
4V6K|1|AB|C|2179
4V6K|1|AB|U|2180
4V6K|1|AB|U|2181
4V6K|1|AB|U|2182

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BO

30S ribosomal protein S11