IL_4V6K_086

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V6K|1|AB|U|2111, 4V6K|1|AB|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6K|1|AB|G|2110
4V6K|1|AB|U|2111
4V6K|1|AB|G|2112
4V6K|1|AB|U|2113
4V6K|1|AB|A|2114
4V6K|1|AB|G|2115
4V6K|1|AB|G|2116
4V6K|1|AB|A|2117
4V6K|1|AB|U|2118
4V6K|1|AB|A|2119
4V6K|1|AB|G|2120
*
4V6K|1|AB|C|2178
4V6K|1|AB|C|2179

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BO

30S ribosomal protein S11