3D structure

PDB id
4V6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into cognate vs. near-cognate discrimination during decoding.
Experimental method
ELECTRON MICROSCOPY
Resolution
8.25 Å

Loop

Sequence
GUGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
4V6K|1|AB|U|2111, 4V6K|1|AB|U|2118
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6K|1|AB|G|2110
4V6K|1|AB|U|2111
4V6K|1|AB|G|2112
4V6K|1|AB|U|2113
4V6K|1|AB|A|2114
4V6K|1|AB|G|2115
4V6K|1|AB|G|2116
4V6K|1|AB|A|2117
4V6K|1|AB|U|2118
4V6K|1|AB|A|2119
4V6K|1|AB|G|2120
*
4V6K|1|AB|C|2178
4V6K|1|AB|C|2179

Current chains

Chain AB
ribosomal RNA 23S

Nearby chains

Chain AC
50S ribosomal protein L1
Chain BO
30S ribosomal protein S11

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1663 s