IL_4V6K_088

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_088 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.2051

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

4V6K|1|AB|C|2350
4V6K|1|AB|G|2351
4V6K|1|AB|A|2352
4V6K|1|AB|G|2353
*
4V6K|1|AB|C|2364
4V6K|1|AB|G|2365
4V6K|1|AB|A|2366
4V6K|1|AB|G|2367

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AX

50S ribosomal protein L27

Chain Af

50S ribosomal protein L35