IL_4V6K_089

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_089 not in the Motif Atlas

Homologous match to IL_7A0S_082

Geometric discrepancy: 0.1876

The information below is about IL_7A0S_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

4V6K|1|AB|U|2401
4V6K|1|AB|U|2402
4V6K|1|AB|C|2403
*
4V6K|1|AB|G|2414
4V6K|1|AB|G|2415

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AM

50S ribosomal protein L15

Chain Ad

50S ribosomal protein L33

Chain Af

50S ribosomal protein L35