3D structure

PDB id
4V6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into cognate vs. near-cognate discrimination during decoding.
Experimental method
ELECTRON MICROSCOPY
Resolution
8.25 Å

Loop

Sequence
GGUG*CUAAC
Length
9 nucleotides
Bulged bases
4V6K|1|AB|A|2873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6K_106 not in the Motif Atlas
Homologous match to IL_7RQB_109
Geometric discrepancy: 0.2288
The information below is about IL_7RQB_109
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_58764.3
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

4V6K|1|AB|G|2843
4V6K|1|AB|G|2844
4V6K|1|AB|U|2845
4V6K|1|AB|G|2846
*
4V6K|1|AB|C|2870
4V6K|1|AB|U|2871
4V6K|1|AB|A|2872
4V6K|1|AB|A|2873
4V6K|1|AB|C|2874

Current chains

Chain AB
ribosomal RNA 23S

Nearby chains

Chain AE
50S ribosomal protein L3
Chain AO
50S ribosomal protein L17
Chain AQ
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0879 s