IL_4V6K_122

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

4V6K|1|BA|G|251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_122 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3092

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V6K|1|BA|U|249
4V6K|1|BA|A|250
4V6K|1|BA|G|251
4V6K|1|BA|U|252
*
4V6K|1|BA|A|274
4V6K|1|BA|G|275

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BU

30S ribosomal protein S17