IL_4V6K_143

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_143 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1377

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V6K|1|BA|C|779
4V6K|1|BA|A|780
4V6K|1|BA|A|781
4V6K|1|BA|A|782
4V6K|1|BA|C|783
*
4V6K|1|BA|G|799
4V6K|1|BA|G|800
4V6K|1|BA|U|801
4V6K|1|BA|A|802
4V6K|1|BA|G|803

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BO

30S ribosomal protein S11

Chain BY

30S ribosomal protein S21