IL_4V6K_154

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

4V6K|1|BA|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_154 not in the Motif Atlas

Homologous match to IL_5J7L_049

Geometric discrepancy: 0.2661

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V6K|1|BA|U|1060
4V6K|1|BA|G|1061
*
4V6K|1|BA|C|1195
4V6K|1|BA|A|1196
4V6K|1|BA|A|1197

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

Transfer RNA; tRNA

Chain BD

mRNA

Chain BG

30S ribosomal protein S3

Chain BI

30S ribosomal protein S5

Chain BN

30S ribosomal protein S10

Chain BR

30S ribosomal protein S14