IL_4V6L_039

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GGU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_039 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.2398

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V6L|1|AA|G|941
4V6L|1|AA|G|942
4V6L|1|AA|U|943
*
4V6L|1|AA|A|1340
4V6L|1|AA|U|1341
4V6L|1|AA|C|1342

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AE

Transfer RNA; tRNA

Chain AK

30S ribosomal protein S7

Chain AM

30S ribosomal protein S9