IL_4V6L_044

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_044 not in the Motif Atlas

Geometric match to IL_5TBW_021

Geometric discrepancy: 0.191

The information below is about IL_5TBW_021

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6L|1|AA|G|1050
4V6L|1|AA|C|1051
4V6L|1|AA|U|1052
*
4V6L|1|AA|G|1206
4V6L|1|AA|2MG|1207
4V6L|1|AA|C|1208

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain AG

30S ribosomal protein S3

Chain AR

30S ribosomal protein S14