IL_4V6L_068

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_068 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.1532

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6L|1|BB|G|24
4V6L|1|BB|U|25
4V6L|1|BB|G|26
4V6L|1|BB|G|27
4V6L|1|BB|A|28
4V6L|1|BB|U|29
4V6L|1|BB|G|30
*
4V6L|1|BB|C|510
4V6L|1|BB|U|511
4V6L|1|BB|G|512
4V6L|1|BB|A|513
4V6L|1|BB|A|514
4V6L|1|BB|A|515
4V6L|1|BB|C|516

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain Bc

50S ribosomal protein L32