IL_4V6L_073

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_073 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.1757

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V6L|1|BB|G|188
4V6L|1|BB|G|189
4V6L|1|BB|A|190
4V6L|1|BB|A|191
4V6L|1|BB|C|192
4V6L|1|BB|U|193
4V6L|1|BB|G|194
*
4V6L|1|BB|C|201
4V6L|1|BB|U|202
4V6L|1|BB|A|203
4V6L|1|BB|A|204
4V6L|1|BB|G|205
4V6L|1|BB|U|206
4V6L|1|BB|A|207
4V6L|1|BB|C|208

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BM

50S ribosomal protein L15

Chain BY

50S ribosomal protein L28