IL_4V6L_081

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_081 not in the Motif Atlas

Geometric match to IL_5TBW_046

Geometric discrepancy: 0.2444

The information below is about IL_5TBW_046

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6L|1|BB|C|672
4V6L|1|BB|C|673
4V6L|1|BB|G|674
*
4V6L|1|BB|C|806
4V6L|1|BB|U|807
4V6L|1|BB|G|808

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BM

50S ribosomal protein L15