IL_4V6L_090

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

4V6L|1|BB|G|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_090 not in the Motif Atlas

Geometric match to IL_4C7O_004

Geometric discrepancy: 0.3723

The information below is about IL_4C7O_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4V6L|1|BB|G|862
4V6L|1|BB|A|863
*
4V6L|1|BB|U|913
4V6L|1|BB|G|914
4V6L|1|BB|C|915

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BN

50S ribosomal protein L16