3D structure

PDB id
4V6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into cognate vs. near-cognate discrimination during decoding.
Experimental method
ELECTRON MICROSCOPY
Resolution
13.2 Å

Loop

Sequence
UUUC*GAUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6L_092 not in the Motif Atlas
Geometric match to IL_4EYA_008
Geometric discrepancy: 0.293
The information below is about IL_4EYA_008
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_51479.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
10

Unit IDs

4V6L|1|BB|U|870
4V6L|1|BB|U|871
4V6L|1|BB|U|872
4V6L|1|BB|C|873
*
4V6L|1|BB|G|904
4V6L|1|BB|A|905
4V6L|1|BB|U|906
4V6L|1|BB|G|907

Current chains

Chain BB
50S ribosomal RNA 23S

Nearby chains

Chain BN
50S ribosomal protein L16

Coloring options:


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