IL_4V6L_098

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V6L|1|BB|U|1012

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_098 not in the Motif Atlas

Homologous match to IL_7A0S_035

Geometric discrepancy: 0.5514

The information below is about IL_7A0S_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

4V6L|1|BB|G|1011
4V6L|1|BB|U|1012
4V6L|1|BB|C|1013
*
4V6L|1|BB|G|1149
4V6L|1|BB|C|1150

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BK

50S ribosomal protein L13

Chain BR

50S ribosomal protein L20