IL_4V6L_105

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

4V6L|1|BB|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_105 not in the Motif Atlas

Geometric match to IL_3NKB_002

Geometric discrepancy: 0.2117

The information below is about IL_3NKB_002

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4V6L|1|BB|G|1087
4V6L|1|BB|A|1088
4V6L|1|BB|A|1089
4V6L|1|BB|A|1090
*
4V6L|1|BB|U|1101
4V6L|1|BB|C|1102

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BJ

50S ribosomal protein L11