IL_4V6L_146

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CCUUG*UAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_146 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.3804

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V6L|1|BB|C|2103
4V6L|1|BB|C|2104
4V6L|1|BB|U|2105
4V6L|1|BB|U|2106
4V6L|1|BB|G|2107
*
4V6L|1|BB|U|2182
4V6L|1|BB|A|2183
4V6L|1|BB|A|2184
4V6L|1|BB|U|2185
4V6L|1|BB|G|2186

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BC

50S ribosomal protein L1