IL_4V6L_150

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_150 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.2062

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

4V6L|1|BB|C|2350
4V6L|1|BB|G|2351
4V6L|1|BB|A|2352
4V6L|1|BB|G|2353
*
4V6L|1|BB|C|2364
4V6L|1|BB|G|2365
4V6L|1|BB|A|2366
4V6L|1|BB|G|2367

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BX

50S ribosomal protein L27

Chain Bd

50S ribosomal protein L33

Chain Bf

50S ribosomal protein L35