3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
AAG*CU
Length
5 nucleotides
Bulged bases
4V6M|1|AA|A|461
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6M_025 not in the Motif Atlas
Geometric match to IL_4V9F_098
Geometric discrepancy: 0.3937
The information below is about IL_4V9F_098
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
132

Unit IDs

4V6M|1|AA|A|460
4V6M|1|AA|A|461
4V6M|1|AA|G|462
*
4V6M|1|AA|C|470
4V6M|1|AA|U|471

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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