IL_4V6M_039
3D structure
- PDB id
- 4V6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ribosome-SecYE complex in the membrane environment
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6M_039 not in the Motif Atlas
- Homologous match to IL_5J7L_037
- Geometric discrepancy: 0.0975
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
4V6M|1|AA|C|779
4V6M|1|AA|A|780
4V6M|1|AA|A|781
4V6M|1|AA|A|782
4V6M|1|AA|C|783
*
4V6M|1|AA|G|799
4V6M|1|AA|G|800
4V6M|1|AA|U|801
4V6M|1|AA|A|802
4V6M|1|AA|G|803
Current chains
- Chain AA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain AK
- 30S ribosomal protein S11
- Chain AU
- 30S ribosomal protein S21
- Chain B8
- Large subunit ribosomal RNA; LSU rRNA
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