IL_4V6M_048

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4V6M|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_048 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1162

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

4V6M|1|AA|U|1052
4V6M|1|AA|G|1053
4V6M|1|AA|C|1054
4V6M|1|AA|A|1055
4V6M|1|AA|U|1056
*
4V6M|1|AA|A|1204
4V6M|1|AA|U|1205
4V6M|1|AA|G|1206

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14

Chain AX

mRNA