3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
CGAUGGUAG*CGAGAGUAG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6M_073 not in the Motif Atlas
Homologous match to IL_7RQB_115
Geometric discrepancy: 0.1338
The information below is about IL_7RQB_115
Detailed Annotation
Bacterial 5S Loop E
Broad Annotation
Loop E
Motif group
IL_56455.3
Basepair signature
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V6M|1|B7|C|71
4V6M|1|B7|G|72
4V6M|1|B7|A|73
4V6M|1|B7|U|74
4V6M|1|B7|G|75
4V6M|1|B7|G|76
4V6M|1|B7|U|77
4V6M|1|B7|A|78
4V6M|1|B7|G|79
*
4V6M|1|B7|C|97
4V6M|1|B7|G|98
4V6M|1|B7|A|99
4V6M|1|B7|G|100
4V6M|1|B7|A|101
4V6M|1|B7|G|102
4V6M|1|B7|U|103
4V6M|1|B7|A|104
4V6M|1|B7|G|105

Current chains

Chain B7
5S RIBOSOMAL RNA

Nearby chains

Chain B8
Large subunit ribosomal RNA; LSU rRNA
Chain BM
50S ribosomal protein L16
Chain BV
50S ribosomal protein L25
Chain BW
50S ribosomal protein L27

Coloring options:


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