IL_4V6M_079

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_079 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.0891

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V6M|1|B8|G|188
4V6M|1|B8|G|189
4V6M|1|B8|A|190
4V6M|1|B8|A|191
4V6M|1|B8|C|192
4V6M|1|B8|U|193
4V6M|1|B8|G|194
*
4V6M|1|B8|C|201
4V6M|1|B8|U|202
4V6M|1|B8|A|203
4V6M|1|B8|A|204
4V6M|1|B8|G|205
4V6M|1|B8|U|206
4V6M|1|B8|A|207
4V6M|1|B8|C|208

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BL

50S ribosomal protein L15

Chain BX

50S ribosomal protein L28