IL_4V6M_081

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_081 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.2599

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V6M|1|B8|C|269
4V6M|1|B8|A|270
4V6M|1|B8|G|271
*
4V6M|1|B8|C|366
4V6M|1|B8|G|367
4V6M|1|B8|A|368
4V6M|1|B8|U|369
4V6M|1|B8|G|370

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BH

50S ribosomal protein L9