3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
4V6M|1|B8|A|504, 4V6M|1|B8|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6M_084 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.2143
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

4V6M|1|B8|G|481
4V6M|1|B8|A|482
4V6M|1|B8|A|483
4V6M|1|B8|C|484
*
4V6M|1|B8|G|496
4V6M|1|B8|A|497
4V6M|1|B8|G|498
4V6M|1|B8|U|499
4V6M|1|B8|G|500
4V6M|1|B8|A|501
4V6M|1|B8|A|502
4V6M|1|B8|A|503
4V6M|1|B8|A|504
4V6M|1|B8|A|505
4V6M|1|B8|G|506
4V6M|1|B8|A|507
4V6M|1|B8|A|508
4V6M|1|B8|C|509

Current chains

Chain B8
23S RIBOSOMAL RNA

Nearby chains

Chain AZ
Cell division protein FtsQ
Chain BA
Preprotein translocase secY subunit
Chain BS
50S ribosomal protein L22
Chain BU
50S ribosomal protein L24

Coloring options:


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