IL_4V6M_084
3D structure
- PDB id
- 4V6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ribosome-SecYE complex in the membrane environment
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 4V6M|1|B8|A|504, 4V6M|1|B8|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6M_084 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.2143
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
4V6M|1|B8|G|481
4V6M|1|B8|A|482
4V6M|1|B8|A|483
4V6M|1|B8|C|484
*
4V6M|1|B8|G|496
4V6M|1|B8|A|497
4V6M|1|B8|G|498
4V6M|1|B8|U|499
4V6M|1|B8|G|500
4V6M|1|B8|A|501
4V6M|1|B8|A|502
4V6M|1|B8|A|503
4V6M|1|B8|A|504
4V6M|1|B8|A|505
4V6M|1|B8|G|506
4V6M|1|B8|A|507
4V6M|1|B8|A|508
4V6M|1|B8|C|509
Current chains
- Chain B8
- 23S RIBOSOMAL RNA
Nearby chains
- Chain AZ
- Cell division protein FtsQ
- Chain BA
- Preprotein translocase secY subunit
- Chain BS
- 50S ribosomal protein L22
- Chain BU
- 50S ribosomal protein L24
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