IL_4V6M_085

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_085 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1058

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V6M|1|B8|G|536
4V6M|1|B8|G|537
4V6M|1|B8|A|538
4V6M|1|B8|G|539
*
4V6M|1|B8|U|554
4V6M|1|B8|G|555
4V6M|1|B8|A|556
4V6M|1|B8|C|557

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20