IL_4V6M_096

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

4V6M|1|B8|U|846, 4V6M|1|B8|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_096 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.5839

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6M|1|B8|A|844
4V6M|1|B8|A|845
4V6M|1|B8|U|846
4V6M|1|B8|U|847
4V6M|1|B8|C|848
*
4V6M|1|B8|G|930
4V6M|1|B8|U|931
4V6M|1|B8|U|932
4V6M|1|B8|A|933
4V6M|1|B8|U|934

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BZ

50S ribosomal protein L30