IL_4V6M_105

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V6M|1|B8|C|995

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_105 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.4199

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4V6M|1|B8|C|994
4V6M|1|B8|C|995
4V6M|1|B8|A|996
*
4V6M|1|B8|U|1159
4V6M|1|B8|G|1160

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21

Chain BZ

50S ribosomal protein L30