IL_4V6M_109
3D structure
- PDB id
- 4V6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ribosome-SecYE complex in the membrane environment
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6M_109 not in the Motif Atlas
- Homologous match to IL_4WF9_039
- Geometric discrepancy: 0.2073
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.5
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
4V6M|1|B8|U|1018
4V6M|1|B8|U|1019
4V6M|1|B8|A|1020
4V6M|1|B8|A|1021
4V6M|1|B8|G|1022
4V6M|1|B8|U|1023
4V6M|1|B8|G|1024
*
4V6M|1|B8|C|1140
4V6M|1|B8|U|1141
4V6M|1|B8|A|1142
4V6M|1|B8|A|1143
4V6M|1|B8|A|1144
Current chains
- Chain B8
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B4
- 50S ribosomal protein L36
- Chain BG
- 50S ribosomal protein L6
- Chain BJ
- 50S ribosomal protein L13
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