3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
4V6M|1|B8|A|1127, 4V6M|1|B8|U|1130
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6M_110 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.1336
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

4V6M|1|B8|G|1024
4V6M|1|B8|G|1025
4V6M|1|B8|G|1026
4V6M|1|B8|A|1027
4V6M|1|B8|A|1028
4V6M|1|B8|A|1029
4V6M|1|B8|C|1030
*
4V6M|1|B8|G|1124
4V6M|1|B8|G|1125
4V6M|1|B8|A|1126
4V6M|1|B8|A|1127
4V6M|1|B8|G|1128
4V6M|1|B8|A|1129
4V6M|1|B8|U|1130
4V6M|1|B8|G|1131
4V6M|1|B8|U|1132
4V6M|1|B8|A|1133
4V6M|1|B8|A|1134
4V6M|1|B8|C|1135
4V6M|1|B8|G|1136
4V6M|1|B8|G|1137
4V6M|1|B8|G|1138
4V6M|1|B8|G|1139
4V6M|1|B8|C|1140

Current chains

Chain B8
23S RIBOSOMAL RNA

Nearby chains

Chain B4
50S ribosomal protein L36
Chain BD
50S ribosomal protein L3
Chain BJ
50S ribosomal protein L13
Chain BM
50S ribosomal protein L16

Coloring options:


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