IL_4V6M_115

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

4V6M|1|B8|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_115 not in the Motif Atlas

Geometric match to IL_4WF9_026

Geometric discrepancy: 0.2135

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4V6M|1|B8|G|1087
4V6M|1|B8|A|1088
4V6M|1|B8|A|1089
4V6M|1|B8|A|1090
*
4V6M|1|B8|U|1101
4V6M|1|B8|C|1102

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BI

50S ribosomal protein L11