IL_4V6M_123

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_123 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0983

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V6M|1|B8|C|1357
4V6M|1|B8|G|1358
4V6M|1|B8|A|1359
4V6M|1|B8|G|1360
4V6M|1|B8|G|1361
*
4V6M|1|B8|C|1370
4V6M|1|B8|G|1371
4V6M|1|B8|U|1372
4V6M|1|B8|A|1373
4V6M|1|B8|G|1374

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain B6

50S ribosomal protein L2

Chain BX

50S ribosomal protein L28