3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
4V6M|1|B8|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6M_137 not in the Motif Atlas
Geometric match to IL_7RQB_068
Geometric discrepancy: 0.1244
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

4V6M|1|B8|C|1686
4V6M|1|B8|G|1687
4V6M|1|B8|U|1688
4V6M|1|B8|A|1689
4V6M|1|B8|A|1690
4V6M|1|B8|C|1691
*
4V6M|1|B8|G|1696
4V6M|1|B8|G|1697
4V6M|1|B8|A|1698
4V6M|1|B8|G|1699
4V6M|1|B8|A|1700
4V6M|1|B8|A|1701
4V6M|1|B8|G|1702

Current chains

Chain B8
23S RIBOSOMAL RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain B6
50S ribosomal protein L2

Coloring options:


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