IL_4V6M_137

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V6M|1|B8|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_137 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1244

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V6M|1|B8|C|1686
4V6M|1|B8|G|1687
4V6M|1|B8|U|1688
4V6M|1|B8|A|1689
4V6M|1|B8|A|1690
4V6M|1|B8|C|1691
*
4V6M|1|B8|G|1696
4V6M|1|B8|G|1697
4V6M|1|B8|A|1698
4V6M|1|B8|G|1699
4V6M|1|B8|A|1700
4V6M|1|B8|A|1701
4V6M|1|B8|G|1702

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain B6

50S ribosomal protein L2