IL_4V6M_144

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

4V6M|1|B8|A|1899, 4V6M|1|B8|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_144 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.1034

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V6M|1|B8|U|1841
4V6M|1|B8|G|1842
*
4V6M|1|B8|U|1898
4V6M|1|B8|A|1899
4V6M|1|B8|A|1900
4V6M|1|B8|A|1901

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain B6

50S ribosomal protein L2