IL_4V6M_148

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V6M|1|B8|A|1938, 4V6M|1|B8|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_148 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.399

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4V6M|1|B8|C|1934
4V6M|1|B8|G|1935
4V6M|1|B8|A|1936
4V6M|1|B8|A|1937
4V6M|1|B8|A|1938
4V6M|1|B8|U|1939
4V6M|1|B8|U|1940
4V6M|1|B8|C|1941
4V6M|1|B8|C|1942
4V6M|1|B8|U|1943
4V6M|1|B8|U|1944
4V6M|1|B8|G|1945
*
4V6M|1|B8|C|1961
4V6M|1|B8|C|1962
4V6M|1|B8|U|1963
4V6M|1|B8|G|1964

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain B6

50S ribosomal protein L2