IL_4V6M_160

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_160 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.1026

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V6M|1|B8|C|2350
4V6M|1|B8|G|2351
4V6M|1|B8|A|2352
4V6M|1|B8|G|2353
*
4V6M|1|B8|C|2364
4V6M|1|B8|G|2365
4V6M|1|B8|A|2366
4V6M|1|B8|G|2367

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BW

50S ribosomal protein L27