IL_4V6M_161

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

4V6M|1|B8|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_161 not in the Motif Atlas

Geometric match to IL_1ET4_002

Geometric discrepancy: 0.3298

The information below is about IL_1ET4_002

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V6M|1|B8|U|2401
4V6M|1|B8|U|2402
4V6M|1|B8|C|2403
*
4V6M|1|B8|G|2414
4V6M|1|B8|G|2415

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S ribosomal protein L33

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15