IL_4V6M_180

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_180 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1636

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V6M|1|B8|G|2843
4V6M|1|B8|G|2844
4V6M|1|B8|U|2845
4V6M|1|B8|G|2846
*
4V6M|1|B8|C|2870
4V6M|1|B8|U|2871
4V6M|1|B8|A|2872
4V6M|1|B8|A|2873
4V6M|1|B8|C|2874

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BN

50S ribosomal protein L17

Chain BP

50S ribosomal protein L19