IL_4V6M_190

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGAGGCUUUGAAG*UGGAGCCGACCUUGAAAUAC

Length

33 nucleotides

Bulged bases

4V6M|1|B8|U|2132, 4V6M|1|B8|G|2157, 4V6M|1|B8|A|2158, 4V6M|1|B8|A|2163, 4V6M|1|B8|C|2164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6M|1|B8|G|2124
4V6M|1|B8|G|2125
4V6M|1|B8|A|2126
4V6M|1|B8|G|2127
4V6M|1|B8|G|2128
4V6M|1|B8|C|2129
4V6M|1|B8|U|2130
4V6M|1|B8|U|2131
4V6M|1|B8|U|2132
4V6M|1|B8|G|2133
4V6M|1|B8|A|2134
4V6M|1|B8|A|2135
4V6M|1|B8|G|2136
*
4V6M|1|B8|U|2155
4V6M|1|B8|G|2156
4V6M|1|B8|G|2157
4V6M|1|B8|A|2158
4V6M|1|B8|G|2159
4V6M|1|B8|C|2160
4V6M|1|B8|C|2161
4V6M|1|B8|G|2162
4V6M|1|B8|A|2163
4V6M|1|B8|C|2164
4V6M|1|B8|C|2165
4V6M|1|B8|U|2166
4V6M|1|B8|U|2167
4V6M|1|B8|G|2168
4V6M|1|B8|A|2169
4V6M|1|B8|A|2170
4V6M|1|B8|A|2171
4V6M|1|B8|U|2172
4V6M|1|B8|A|2173
4V6M|1|B8|C|2174

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S ribosomal protein L1