IL_4V6N_004
3D structure
- PDB id
- 4V6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6N_004 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1494
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V6N|1|AA|C|71
4V6N|1|AA|G|72
4V6N|1|AA|A|73
4V6N|1|AA|U|74
4V6N|1|AA|G|75
4V6N|1|AA|G|76
4V6N|1|AA|U|77
4V6N|1|AA|A|78
4V6N|1|AA|G|79
*
4V6N|1|AA|C|97
4V6N|1|AA|G|98
4V6N|1|AA|A|99
4V6N|1|AA|G|100
4V6N|1|AA|A|101
4V6N|1|AA|G|102
4V6N|1|AA|U|103
4V6N|1|AA|A|104
4V6N|1|AA|G|105
Current chains
- Chain AA
- 5S ribosomal RNA
Nearby chains
- Chain AB
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- 50S ribosomal protein L16
- Chain AX
- 50S ribosomal protein L25
- Chain AY
- 50S ribosomal protein L27
Coloring options: