IL_4V6N_010

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_010 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.1561

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V6N|1|AB|G|188
4V6N|1|AB|G|189
4V6N|1|AB|A|190
4V6N|1|AB|A|191
4V6N|1|AB|C|192
4V6N|1|AB|U|193
4V6N|1|AB|G|194
*
4V6N|1|AB|C|201
4V6N|1|AB|U|202
4V6N|1|AB|A|203
4V6N|1|AB|A|204
4V6N|1|AB|G|205
4V6N|1|AB|U|206
4V6N|1|AB|A|207
4V6N|1|AB|C|208

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AN

50S ribosomal protein L15

Chain AZ

50S ribosomal protein L28