IL_4V6N_013

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_013 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4819

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V6N|1|AB|C|274
4V6N|1|AB|C|275
4V6N|1|AB|U|276
4V6N|1|AB|G|277
4V6N|1|AB|A|278
4V6N|1|AB|A|279
4V6N|1|AB|U|280
4V6N|1|AB|C|281
*
4V6N|1|AB|G|359
4V6N|1|AB|U|360
4V6N|1|AB|G|361
4V6N|1|AB|A|362
4V6N|1|AB|G|363

Current chains

Chain AB

23S ribosomal RNA

Nearby chains