IL_4V6N_025

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4V6N|1|AB|G|776, 4V6N|1|AB|A|788, 4V6N|1|AB|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_025 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.2576

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|G|775
4V6N|1|AB|G|776
4V6N|1|AB|G|777
*
4V6N|1|AB|C|787
4V6N|1|AB|A|788
4V6N|1|AB|A|789
4V6N|1|AB|U|790
4V6N|1|AB|C|791

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2