IL_4V6N_033

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_033 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.5811

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V6N|1|AB|G|875
4V6N|1|AB|C|876
4V6N|1|AB|A|877
4V6N|1|AB|A|878
4V6N|1|AB|G|879
*
4V6N|1|AB|C|898
4V6N|1|AB|A|899
4V6N|1|AB|A|900
4V6N|1|AB|C|901
4V6N|1|AB|C|902

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L16

Chain BB

Transfer RNA; tRNA