IL_4V6N_036

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V6N|1|AB|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_036 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.4086

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4V6N|1|AB|C|994
4V6N|1|AB|C|995
4V6N|1|AB|A|996
*
4V6N|1|AB|U|1159
4V6N|1|AB|G|1160

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L30

Chain AL

50S ribosomal protein L13

Chain AS

50S ribosomal protein L20

Chain AT

50S ribosomal protein L21