IL_4V6N_045

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

4V6N|1|AB|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_045 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.2658

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|AB|G|1087
4V6N|1|AB|A|1088
4V6N|1|AB|A|1089
4V6N|1|AB|A|1090
*
4V6N|1|AB|U|1101
4V6N|1|AB|C|1102

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L36

Chain AK

50S ribosomal protein L11