IL_4V6N_049
3D structure
- PDB id
- 4V6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6N_049 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1748
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V6N|1|AB|A|1262
4V6N|1|AB|U|1263
4V6N|1|AB|A|1264
4V6N|1|AB|A|1265
4V6N|1|AB|G|1266
4V6N|1|AB|U|1267
4V6N|1|AB|A|1268
4V6N|1|AB|A|1269
*
4V6N|1|AB|U|2011
4V6N|1|AB|G|2012
4V6N|1|AB|A|2013
4V6N|1|AB|A|2014
4V6N|1|AB|A|2015
4V6N|1|AB|U|2016
4V6N|1|AB|U|2017
Current chains
- Chain AB
- 23S ribosomal RNA
Nearby chains
- Chain A3
- 50S ribosomal protein L32
- Chain AF
- 50S ribosomal protein L4
- Chain AS
- 50S ribosomal protein L20
- Chain AU
- 50S ribosomal protein L22
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