IL_4V6N_063

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_063 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.2324

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V6N|1|AB|G|1651
4V6N|1|AB|A|1652
4V6N|1|AB|G|1653
4V6N|1|AB|A|1654
4V6N|1|AB|A|1655
4V6N|1|AB|C|1656
*
4V6N|1|AB|G|2004
4V6N|1|AB|A|2005
4V6N|1|AB|C|2006

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AP

50S ribosomal protein L17